Bug Fixes
- Patched for ggplot2 v4.0.0
- Switched to
SimpleUpset
for Upset plots
Changes
- Changed handling of arguments in plotting functions, setting NULL as the primary default value
Bioconductor 3.20 release
New Features
- Added
centrePeaks()
to recentre peaks using any files with coverage
Improvements
- Added
merge_within
to makeConsensus()
for better handling when method = "coverage"
Improvements
- Added handling of unquoted column names to most plotting functions
- Added passing of specific columns to
dualFilter()
- Added
drop
argument to addDiffStatus()
New Features
- Added fixed-width vignette and edited sliding window vignette
- Added
se
and peaks
as example data for man pages and vignettes
- Added
defineRegions()
New Features
- Added
mergeByHMP()
for merging overlapping windows using the harmonic mean p-value
New Features
- Added
plotOverlaps()
for generation of Venn Diagrams and ComplexUpset plots
Major Changes
- Submitted to Bioconductor