Bug Fixes

  • Patched for ggplot2 v4.0.0
  • Switched to SimpleUpset for Upset plots

Changes

  • Changed handling of arguments in plotting functions, setting NULL as the primary default value

No user-facing changes

Bioconductor 3.20 release

New Features

  • Added centrePeaks() to recentre peaks using any files with coverage

Improvements

  • Added merge_within to makeConsensus() for better handling when method = "coverage"

New Features

Improvements

Improvements

  • Added handling of unquoted column names to most plotting functions
  • Added passing of specific columns to dualFilter()
  • Added drop argument to addDiffStatus()

New Features

New Features

Improvements

Improvements

Improvements

New Features

New Features

New Features

  • Added fixed-width vignette and edited sliding window vignette
  • Added se and peaks as example data for man pages and vignettes
  • Added defineRegions()

Improvements

Improvements

Improvements

New Features

New Features

  • Added mergeByHMP() for merging overlapping windows using the harmonic mean p-value

Improvements

New Features

Bug Fixes

New Features

New Features

New Features

  • Added plotOverlaps() for generation of Venn Diagrams and ComplexUpset plots

Improvements

Bug Fixes

Bug Fixes

Major Changes

  • Submitted to Bioconductor