Function reference • transmogR

Modify a Reference
`indelcator()`	Substitute InDels into one or more sequences
`owl()`	OverWrite Letters in an XStringSet
`genomogrify()`	Mogrify a genome using a set of variants
`transmogrify()`	Mogrify a transcriptome using a set of variants
Additional Functions
`parY()`	Get the PAR-Y Regions From a Seqinfo Object
`overlapsByVar()`	Count overlaps by variant type
`upsetVarByCol()`	Show Variants by Impacted Columns
`varTypes()`	Identify SNVs, Insertions and Deletions
`sjFromExons()`	Obtain Splice-Junctions from Exons and Transcripts

Reference