Changelog

Source: NEWS.md

transmogR 0.1.0

• Initial github commit

transmogR 0.1.1

• Added mogrify functions

transmogR 0.1.2

• Added support for working directly from VCF files
• Added SNV, Insertion & Deletion calling (calvInDel)

transmogR 0.1.3

• Added UpSet plot for showing variants by gene/transcript
• Added overlapsByVar

transmogR 0.1.4

• Changed function names
• Added sjFromExons

transmogR 0.1.5

• Major Bugfix in mogrifyTranscriptome when adding var_labels
• Passed … to mclapply() where relevant
• Moved extraChIPs to Suggests & stopped chopping the output from sjFromExons()
• Allowed sjFromExons() to return a GInteractions object

transmogR 0.1.6

• Added vignette

transmogR 0.1.7

• Renamed mogrify*() to transmogrify() and genomogrify()
• Added masking to genomogrify()

transmogR 0.1.8

• Switched parY() to an S4 methods