Modify a set of reference sequences using a set of variants • transmogR

This package contains functions for creating a variant-modified reference genome or transcriptome. SNPs, Insertions and Deletions are all supported.

With a generous tip of the hat and deep appreciation to Bill Watterson. Results are expected to be more predictable than for prototype transmogrifiers.

To install the stable version of transmogR from Bioconductor please try the following.

if (!require("BiocManager")) {
  install.packages("BiocManager")
}
BiocManager::install("transmogR")

Alternatively, the latest build can be installed using

if (!require("BiocManager")) {
  install.packages("BiocManager")
}
BiocManager::install("smped/transmogR")