List Genomes or Transcriptomes with Theoretical GC Content

Source: R/TheoreticalGC.R

List available genomes or transcriptomes in a TheoreticalGC object

gcAvail(object, type)

# S4 method for class 'TheoreticalGC'
gcAvail(object, type)

Arguments

object

An object of class TheoreticalGC

type

character indicating either Genome or Transcriptome

Value

A tibble object

Details

An object of class TheoreticalGC can hold the theoretical GC content for one or more species, for either the genome or transriptome. This function checks which species are available in the given object, for either the genome or transcriptome, as supplied to the parameter type.

Examples

gcAvail(gcTheoretical, "Genome")
#> # A tibble: 24 × 4
#>    Name          Group    Source Version   
#>    <chr>         <chr>    <chr>  <chr>     
#>  1 Alyrata       Plants   JGI    V1.0      
#>  2 Amellifera    Animals  UCSC   apiMel2   
#>  3 Athaliana     Plants   TAIR   Arapot11  
#>  4 Btaurus       Animals  UCSC   bosTau8   
#>  5 Celegans      Animals  UCSC   ce11      
#>  6 Cfamiliaris   Animals  UCSC   canFam3   
#>  7 Dmelanogaster Animals  UCSC   dm6       
#>  8 Drerio        Animals  UCSC   danRer10  
#>  9 Ecoli         Bacteria NCBI   2008/08/05
#> 10 Gaculeatus    Other    UCSC   gasAcu1   
#> # ℹ 14 more rows