Sequences from peaks with AR and ER detected

The genomic sequences obtained from the ar_er_peaks

data("ar_er_seq")

Format

An object of class DNAStringSet of length 229.

Details

These sequences represent the sequences obtained from BSgenome.Hsapiens.UCSC.hg19 for thw peaks supplied as ar_er_peaks

Generation of these sequences is documented in system.file("scripts/ar_er_peaks.R", package = "motifTestR")

Examples

data("ar_er_seq")
ar_er_seq
#> DNAStringSet object of length 229:
#>       width seq
#>   [1]   400 TCTAATATGGCGAGAGATAATAGGAGGGCCACG...AGGGAATGGGCGTTCATCCTGAAACCAGTCCT
#>   [2]   400 AGCGACGATCCGTCTCCGGTGACTCACAACACT...AGGCCTGGCTTCCTTCACATCATTTCCCATGT
#>   [3]   400 GAAATCTATCTCAGTTTGATGCAAGCCCTGTTG...CGGGCCACACAGTGAGATCCTGCCTCTACAAA
#>   [4]   400 GTGCTTCCAAACACAGGGCTCAGCACATAAATA...CGGCTTGTTTGGGTTCGCATTTCAAGTGCTCT
#>   [5]   400 TACACACATGTATGTGGGACATACAAAGTGTGT...ACTGGTCTTAAAAAGAGCATTTCAAAGCAGAT
#>   ...   ... ...
#> [225]   400 CATGTAACCACCACTATTAAGATATATGATATC...TGAATAAAACTGCTTTAATCTTCATATACACA
#> [226]   400 CTAGAGTAGAAACAACTAGGTCCAAACCCTGAA...AGGGGGTGGGGGAGAGACTAATGCAGCCTGCA
#> [227]   400 CTCTAGACAGTGGTGGAGCTTGCGGGAGTCACA...AAGACGGGTTGAGCGAGTCAGGTTGCTTACTT
#> [228]   400 TTCCCTTTCTCTGTTTTTTTCTATAGTGAGGCC...TATGTTTGCAATGGCCATAGAAGTAGTTCAGG
#> [229]   400 ATTCAGGTAATCAAAAGTTGCAAAAAAAAAAAA...AGGAGAGTCAGGGAAATGAAAAATTACAAAAA