Sequences from peaks with AR and ER detected

The genomic sequences obtained from the ar_er_peaks

Usage

data("ar_er_seq")

Format

An object of class DNAStringSet of length 849.

Details

These sequences represent the sequences obtained from BSgenome.Hsapiens.UCSC.hg19 for thw peaks supplied as ar_er_peaks

Generation of these sequences is documented in system.file("scripts/ar_er_peaks.R", package = "motifTestR")

Examples

data("ar_er_seq")
ar_er_seq
#> DNAStringSet object of length 849:
#>       width seq
#>   [1]   400 CTCCACCTCCCGCCCCTCCCCTGCACCCAGGAT...TGAGCCTGTGCAGGTAAGGGGTGAACACGGGC
#>   [2]   400 CCGTGGGGGGAGGCTGAGGCTATGGGGACTCTG...AGATTCCAGGGCAGGGGGTGGGCCCGCCTGGT
#>   [3]   400 GACGCGCAGGGAACGTCCCTCGGGCCGGGCCAG...GGAAATGTAGTCCTAGAAGAACCAGCGCATGT
#>   [4]   400 GAGCCACCACGCCCGGCGAATTTTTGTATTTTT...CACCAAGGGAGGTCGGCTGTTACATGTAACAT
#>   [5]   400 GTGGAGGGTCCTCACTTTTTGTTTTGCAAATAA...CAGCGTGGCTTAGGGTTTAGGAGCATGGCTGG
#>   ...   ... ...
#> [845]   400 CTCTAGACAGTGGTGGAGCTTGCGGGAGTCACA...AAGACGGGTTGAGCGAGTCAGGTTGCTTACTT
#> [846]   400 TTCCCTTTCTCTGTTTTTTTCTATAGTGAGGCC...TATGTTTGCAATGGCCATAGAAGTAGTTCAGG
#> [847]   400 ATTCAGGTAATCAAAAGTTGCAAAAAAAAAAAA...AGGAGAGTCAGGGAAATGAAAAATTACAAAAA
#> [848]   400 TGGTTCCGCGCTCTAGCGCCGGCTCCGCGGGAA...AGCTTGCATTCTGTATTTTCTGTTCTGTGCTC
#> [849]   400 GGCTTCCCGGGTGTCCTGGCGTCAGCTAGGGAT...CTGGGATCCGACCATGCAAGAAGGACATTCAC