extraChIPs
is a package primarily designed to enable ChIP-Seq analysis. Whilst the package was primarily built for the GRAVI: Gene Regulatory Analysis using Variable Inputs
workflow, the functionality extends beyond this specific application. Functions focus primarily on
mcols()
when manipulating GRanges
objectsIt is intended that these functions will integrate seamlessly with other packages such as those provided in csaw
, plyranges
and limma
.
In addition to enabling workflows, simple coercion to tibble
objects from DataFrame
, GRanges
and GInteractions
objects is implemented.
To install this package from Bioconductor, please use BiocManager
.
install.packages("BiocManager")
BiocManager::install("extraChIPs")
To install the development version from github
BiocManager::install("smped/extraChIPs")